
Union County · Northeast Florida
Septic & well services in Union County
Union County is not in the St. Johns River Water Management District. It sits in the Suwannee River Water Management District. That changes who issues a well permit here. The Suwannee District issues it itself. Rule 40B-3.041, F.A.C., sets the terms. A District permit comes first, before a well is built, repaired, modified or abandoned. Rule 40B-3.051 exempts four narrow activities. An ordinary household well is not one of them. The septic permit comes from a different office. That one comes from the Florida Department of Health in Union County.
Crews with 20+ years in the tradeLicensed & insuredOne-year warranty
Septic backing up? Call us now.
Sewage in the yard or the house, a tank that won’t drain, or a well with no water. Call and you will get a person and a straight answer about when we can be there.
Working in Union County
DEP supervises Florida’s five water management districts. It publishes a table of which counties sit in each one. The Suwannee River row names its full counties first. They are Columbia, Dixie, Gilchrist, Hamilton, Lafayette, Madison, Suwannee, Taylor and Union. The row then names portions of Alachua, Baker, Bradford, Jefferson and Levy. Union is in the named-in-full group, not the partial group. The St. Johns River row on that same table does not name Union at all. One line of a state table is what makes well permitting here different.
The Suwannee District permits wells itself. Union County has no health department delegation for wells. Rule 40B-3.041, F.A.C., carries the requirement. A well within the District needs a District permit first. That covers construction, repair, modification and abandonment. The only exceptions are the activities expressly exempted in Rule 40B-3.051, F.A.C. Chapter 40B-3 does hold a rule titled Delegation. What it delegates stays inside the District. General administration of the chapter goes to the District’s Executive Director. The Executive Director is expressly authorized to issue permits under it. No county office appears in that rule.
Rule 40B-3.051 exempts four activities, and the full list is short. It covers wells constructed, repaired or abandoned solely for a test hole, and wells constructed, repaired or abandoned for temporary dewatering. It also covers modification of a potable well to a non-potable well type. And it covers installation of piezometers or monitoring wells to monitor wetlands or other surface waters. An ordinary household well is not any of those. Two chapters govern the rest. Chapter 40B-3 F.A.C. is titled Permitting of Well Construction, and it is the Suwannee District’s. Chapter 62-532 F.A.C. is titled Water Well Permitting and Construction Requirements. The chapter number is the part people get wrong. Union’s is 40B-3.
Septic is the other half of the split. It did not move. The Florida Department of Health in Union County issues the permit. Its Environmental Public Health Program runs the work, and that program’s menu carries onsite sewage disposal. DEP’s onsite sewage permitting FAQ sorts the state into two county blocks. Union sits in the second block. There, permits for OSTDS are issued by the Environmental Public Health Program of the Florida Department of Health’s local county health department. Two dates sit behind that, and they do different work. Since July 1, 2021, DEP has been in charge of enforcing Florida laws and rules about onsite sewage treatment and disposal systems. That is enforcement. Starting January 2, 2025, DEP manages septic system permitting in 16 counties. That is permitting, and Union is not one of the 16. The county health department states the result. Outside those 16 counties, your local county health department will still handle septic system permitting and inspections. DEP puts the rest on the legislature. The transition of the remaining 50 counties will occur depending on legislative approval. The standards are in section 381.0065, Florida Statutes, and Chapter 62-6, F.A.C.
The U.S. Census Bureau’s 2020 place-by-county file gives Union County three rows. They are Lake Butler city, Raiford town and Worthington Springs town. All three are typed as incorporated places. Those three rows are every Union County row in the file. That file is a register of Census places, not a roll of every community in the county.
The Florida Department of Health inventories how each parcel gets water and handles wastewater. Its Florida Water Management Inventory maps for Union County are dated 2022. The map date on their face is 05Apr2022. They count built parcels, not people and not households. On the wastewater map, 1,340 parcels are known septic (34.4%). Another 2,144 are likely septic (55.0%). FDOH labels that second group likely, and its map keeps the likely count apart from the known count. Another 383 parcels (9.8%) carry no data. The sewer side of that map records 1 parcel as known (0.0%) and 28 as likely (0.7%). FDOH warns that there are gaps in the data. Those gaps come from a lack of available information, and from several public water and sewer providers not submitting data. The drinking water map records 1,564 parcels as known private well (40.1%). Another 1,585 are likely private well (40.7%). A further 624 (16.0%) carry no data, and 17 (0.4%) conflict. Both maps take their percentages from built parcels, including parcels of unknown built status. Both leave out parcels where the service does not apply. On the wastewater map that group holds 2,654 parcels.
USGS keeps a groundwater monitoring location in the county. It is called Lake Butler Well No. 1. Its record gives the national aquifer as the Floridan aquifer system. It gives the local aquifer as the Upper Floridan Aquifer. Well depth is 357 feet. The same record places the well in the Santa Fe subbasin hydrologic unit. That is one monitoring well, not a survey of domestic wells. No typical Union County well depth is published in the sources behind this page.
The regional picture comes from a 2007 USGS study of the Suwannee River Basin. It is Scientific Investigations Report 2007-5031. Its study area is northern Florida and southern Georgia. The report describes three principal hydrogeologic units there. They are the surficial aquifer system, the intermediate aquifer system, and the Floridan aquifer system. The intermediate one contains the intermediate confining unit, the Hawthorn Group. The report says the Upper Floridan aquifer is present throughout the study area. It calls that aquifer extremely permeable and typically capable of transmitting large volumes of water. Union County is named in the report for the extent of an earlier model. Motz (1995) simulated flow in the surficial, intermediate, and Upper and Lower Floridan aquifers, and the Fernandina Permeable Zone. That model covered most of Union County, all of Bradford County, and the eastern two-thirds of Alachua County within the district. Those are basin-scale findings published in 2007, and a model extent from 1995. Neither is a reading under any one property.
Part of Union County lies inside the Santa Fe River Basin Management Action Plan area. DEP adopted that plan in June 2025. The plan says the BMAP area comprises over one million acres in Alachua, Bradford, Columbia, Gilchrist, Suwannee, and Union counties. That is portions of six counties. The plan never says the whole of Union County is inside the line. Four responsible entities from this county are listed in it. They are Union County, the City of Lake Butler, the Town of Raiford and the Town of Worthington Springs. The plan also assigns Union County nitrogen reductions. Its Devil’s Ear springshed table gives the county 4,737 pounds per year. A separate table covers the area outside the springsheds. That one gives the county 4,330 pounds per year. About 40 acres of Union County fall inside the Ichetucknee Priority Focus Area. Whether a particular address sits inside the BMAP boundary is a map question for DEP or the county health department. This page does not answer it.
The plan lists activities that are prohibited in the BMAP boundary. They come under section 373.811, F.S. One of them reaches septic systems directly. It covers new OSTDS on lots one acre or less inside the BMAP where central sewer is available. If central sewer is unavailable, then the owner must install a DEP-approved enhanced nutrient-reducing OSTDS. That system has to achieve at least 65% nitrogen reduction. Another wastewater system that achieves at least 65% reduction also meets the rule. The plan’s own bullet is written for new systems. That prohibition binds inside the boundary, not across the county.
Gator works both trades in Union County. Septic jobs here include tank pumping and inspections, new tank installation, drain field repair and replacement, and septic pump repair. Well jobs include pump repair and pump replacement, pressure and bladder tanks, well water testing, and well inspections for a home sale. Hours are Monday to Friday, 8:00am to 6:00pm. Gator holds FDEP Business Authorization SA0222129 and licence CUC1225779.
Towns and communities in Union County
We work across the county. The places with a page of their own are linked; the rest are served the same way.
Lake Butler, Raiford, Worthington Springs.
Who issues the permit in Union County
The answer is not the same in the next county over.
Septic permits
Florida Department of Health in Union County, Environmental Public Health — 386-496-3211. DEP’s county table puts Union in the block where the Environmental Public Health Program of the local county health department issues OSTDS permits. So the septic application goes here. Standards: section 381.0065, Florida Statutes, and Chapter 62-6, F.A.C. The well permit is not part of this. That one goes to the District.
Well permits
Suwannee River Water Management District — the District issues the well permit itself. There is no county health department delegation in Union County. Rule 40B-3.041(1), F.A.C.: unless expressly exempted in Rule 40B-3.051, F.A.C., a permit must be obtained from the District prior to the construction, repair, modification, or abandonment of any well within the District. Rule 40B-3.051 exempts four activities. They are a well constructed, repaired or abandoned solely for a test hole; wells constructed, repaired or abandoned for temporary dewatering; modification of a potable well to a non-potable well type; and installation of piezometers or monitoring wells to monitor wetlands or other surface waters. An ordinary household well is not one of them. Rule chapters: 40B-3 F.A.C., Permitting of Well Construction, and 62-532 F.A.C., Water Well Permitting and Construction Requirements. Septic permits come from the Florida Department of Health in Union County instead.
How our estimates work
Some jobs we can price on the phone. The big ones nobody can, and we would rather tell you why than invent a number.
- 01
A ballpark on the first call
A range for a property like yours, and a straight answer on what would move it. Not a commitment, and we will say so.
- 02
A written estimate for the part we can price
On permitted work that means the site evaluation, the soil testing and the permit. You get it in writing, so the job can start.
- 03
A crew out to the site
The evaluation happens on site. The results are what the county needs and what your final number depends on.
- 04
The firm number, once it is knowable
With the soil results and the permit in hand, the price for the actual work is real rather than a guess with a margin built in.
Union County questions
Who issues a well permit in Union County?
The Suwannee River Water Management District issues it itself. Union County is in the Suwannee District, and it has no health department delegation for wells. Rule 40B-3.041, F.A.C., puts it this way: unless expressly exempted in Rule 40B-3.051, F.A.C., a permit must be obtained from the District prior to the construction, repair, modification, or abandonment of any well within the District. Four activities are exempt under 40B-3.051. They are a well constructed, repaired or abandoned solely for a test hole; wells constructed, repaired or abandoned for temporary dewatering; modification of a potable well to a non-potable well type; and installation of piezometers or monitoring wells to monitor wetlands or other surface waters. An ordinary household well is not one of them. The septic permit is separate. It comes from the Florida Department of Health in Union County.
Does the St. Johns River Water Management District permit wells in Union County?
No. DEP’s water management districts table names Union among the counties the Suwannee River Water Management District covers. The St. Johns row does not name Union at all. The St. Johns District’s own well construction page lists the counties where local health departments permit wells under its delegation. Union does not appear on that page. In Union the Suwannee District issues the permit under Rule 40B-3.041, F.A.C. A permit is needed before a well is constructed, repaired, modified or abandoned, unless the activity is one of the four that Rule 40B-3.051 exempts. Septic permits come from the Florida Department of Health in Union County either way.
Who issues a septic permit in Union County?
The Florida Department of Health in Union County, through its Environmental Public Health Program. DEP’s FAQ places Union in the county block where the local county health department issues OSTDS permits. DEP says it is permitting OSTDS in Northwest Florida and Marion County. Starting January 2, 2025, DEP manages septic permitting in 16 counties, and Union is not one of them. Outside those 16 counties, your local county health department will still handle septic system permitting and inspections. DEP ties the remaining 50 counties to legislative approval. Wells run the other way here. That permit comes from the Suwannee River Water Management District itself.
Does the Santa Fe River BMAP limit a new septic system in Union County?
Inside the BMAP boundary it does. The Santa Fe River BMAP was adopted in June 2025. Its area comprises over one million acres in Alachua, Bradford, Columbia, Gilchrist, Suwannee, and Union counties. That is portions of six counties, not all of any of them. Inside that boundary, new OSTDS on lots one acre or less are prohibited where central sewer is available. If central sewer is unavailable, then the owner must install a DEP-approved enhanced nutrient-reducing OSTDS. It has to achieve at least 65% nitrogen reduction. Another wastewater system that achieves at least 65% reduction also meets the rule. That prohibition is written for new systems inside the boundary, not for the county. Whether a given address is inside is a question for DEP or the county health department.
What does USGS record about the aquifer under Union County?
One monitoring well and one regional study. The USGS record for Lake Butler Well No. 1 gives the Floridan aquifer system as the national aquifer. It gives the Upper Floridan Aquifer as the local aquifer, at a well depth of 357 feet. That is a single monitoring well, not a survey of domestic wells. No typical Union County well depth is published in the sources behind this page. The 2007 USGS study of the Suwannee River Basin describes the Upper Floridan aquifer as present throughout its study area. It calls it extremely permeable and typically capable of transmitting large volumes of water. That study area is northern Florida and southern Georgia. Those are 2007 basin-scale findings, not a measurement of any one property.
Tell us what the system is doing.
Call and talk to someone who works on these every day, or send the details and we will come back to you.
