
Water wells
Drilling a new well on your lot
We drill new water wells, and we also do the septic work on the same properties. That second part matters more than it sounds. Where a well can go depends on where the septic system already is, and which office issues the permit depends on the county. This page covers both, along with how the pump is matched to the well.
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No water? Call and we will tell you what it sounds like.
A well that has stopped delivering, pressure that has dropped away, or a pump that will not shut off. Call and you will get a person and a straight answer about when we can be there.
The septic system sets the first boundary
Where a lot has both a well and a septic system, Rule 62-6.005 F.A.C. (version effective 8 June 2026) sets the minimum gap between them. For a private potable well, which is a drinking-water well, the septic system must sit at least 75 feet away. For a non-potable water well the minimum is 50 feet.
When the lot is small, that setback fixes the positions of both the well and the drain field. It is about more than paperwork, because a failing drain field can contaminate a well on the same lot. We work on both sides, so we site the well with the existing tank and drain field in view and check the separation before the location is set.
Permit offices across the service area
Getting the permit is the first step for any new well, and which office you apply to is set by the county. For well construction, most of the service area sits under the St. Johns River Water Management District. The District delegates permitting through sixteen agreements with local health departments and one with the City of Jacksonville, which together cover every well in the District that it does not permit itself.
Within the St. Johns district, a well six inches or more in outside diameter at land surface is permitted by the District itself, not by the local office. Wells inside the delineated areas of Duval, St. Johns and Putnam are District permits too. Under Florida law, a delineated area is one with known groundwater contamination or one treated as vulnerable, and wells built there must meet extra construction rules.
Green Cove Springs and Macclenny each add a city step. For a well inside Green Cove Springs city limits, the District permit issued through the county health department has to go to the city building department, which then issues a written city permit. Within Macclenny city limits, the city’s Water Well Ordinance calls for a city permit before any drilling, and the city can only permit a well for the purposes its code allows.
- Clay, Nassau and St. Johns: the county health department, which permits on behalf of the St. Johns River Water Management District.
- Duval: the City of Jacksonville Environmental Quality Division for wells under six inches in diameter, under Chapter 366 of the city Ordinance Code and Environmental Protection Board Rule 8.
- Union: the county health department is not involved. Well permits come straight from the Suwannee River Water Management District under Chapter 40B-3 F.A.C.
- Baker: part of the county sits in each district (s. 373.069 F.S.). Properties on the St. Johns side get their permit from the Florida Department of Health in Baker County, and the districts are the ones to ask which side a given property falls on.
Aquifers, iron and sulfur
Most private wells here draw from either the surficial aquifer or the Floridan aquifer. Which one a well draws from shapes how deep it goes, how much water it yields and the chemistry of what comes out of the tap. It is one of several things that shape a new well, alongside where it can sit on the lot. The household’s demand then decides the pump.
Iron and sulfur are common locally. They are mostly a taste, smell and staining problem rather than a health one. We do not sell or fit treatment for them, so if the water calls for it, we will point you at the right trade.
Sizing the pump to the well, not the catalogue
We fit the pump, the pressure tank and the switch on the wells we drill.
The pump has to match the well and the house together. On the well side that means its depth, the static water level and the yield it can sustain. On the house side it means the fixtures, how many of them run at once, any irrigation, and the voltage and wire size out to the wellhead.
Bigger is not safer. An oversized pump draws the water down faster than the well refills, and then it runs dry.
Testing the water, and where our work stops
A water utility tests what it supplies, and none of that covers a private well. Once the well is yours, you are the only one checking it. Owners are usually advised to have it checked for bacteria and nitrates once a year, and a proper test means a lab analyses a sample. We do well water testing, so we can take that sample for you.
We do not sell or fit water treatment equipment. If the results point that way, we will tell you what you are looking at and point you at the right trade.
Our well work, and where it stops
We drill new wells and look after the ones already in the ground. That covers the pump, the pressure or bladder tank, the switches and wiring that go with them, water testing, and inspections for a home sale. We do not sell or fit water treatment equipment.
Treatment is a separate trade, and we would rather say so up front than leave you guessing. If your water needs it, call anyway. We will tell you what you are looking at and point you at the right trade.
Where we do this work
We handle well drilling across Duval, Clay, Nassau, St. Johns, Putnam, Union and Baker counties. Each area page covers the local ground conditions and which office issues the permit there.
Jacksonville · St. Augustine · Orange Park · Middleburg · Green Cove Springs · Ponte Vedra Beach · Fernandina Beach · Yulee
See every area we serve, all water well services, or who issues your permit.
Well drilling — questions we get asked
Does Gator Well & Septic drill new wells?
Yes. Gator Well & Septic drills new water wells and fits the pump, pressure tank and switch that go with them, and we test well water. We also do septic work, which helps when the well and the septic system share a lot. A permit is needed before a new well is drilled, and the office that issues it depends on the county. We do not sell or fit water treatment equipment.
Is the well permit process different in Duval County?
Yes. Outside delineated areas, a Duval County well under six inches in diameter is permitted by the City of Jacksonville Environmental Quality Division, under Chapter 366 of the city Ordinance Code and Environmental Protection Board Rule 8. A well six inches or larger is permitted by the St. Johns River Water Management District. The exception is a well in one of Duval’s delineated areas. Florida law treats those areas as having known groundwater contamination or as vulnerable. Wells in those areas face extra construction rules, and the District issues their permits.
Why does the septic system affect where a new well goes?
Rule 62-6.005 F.A.C., in the version effective 8 June 2026, requires a septic system to be at least 75 feet from a private potable well and at least 50 feet from a non-potable water well. On a small lot those distances decide where the well and the septic system can go. The separation also protects the water, because a failing drain field can contaminate a well on the same lot. Gator Well & Septic works on both, so the well is sited with the existing tank and drain field in view.
What goes wrong if a well pump is oversized?
An oversized pump draws the water down faster than the well refills, and then it runs dry. A pump should be matched to the well depth, the static water level and the yield the well can sustain. It should also be matched to the house: the fixtures, how many run at the same time, any irrigation, and the voltage and wire size out to the wellhead.
Will you treat iron or sulfur in a new well?
No. Gator Well & Septic does not sell or fit water treatment equipment, and that includes iron and sulfur treatment. Iron and sulfur are common in local well water and are mostly a taste, smell and staining issue rather than a health one. If you want them treated, we can point you at the right trade.
Related services
Wells
Well pump replacement
A replacement pump is not a like-for-like part swap. Sizing it to the well and the household is what decides whether you get fifteen years out of it or three.
Read more →Wells
Pressure tanks
The least understood component on a well system, and the one whose failure quietly destroys the most expensive one.
Read more →Wells
Well water testing
A private well is not covered by the testing a public utility does. Nobody is checking your water except you, and there is no notification when something changes.
Read more →Tell us what the system is doing.
Call and talk to someone who works on these every day, or send the details and we will come back to you.
